Biosphere

Entries categorized as ‘Teaching’

Biology Overseas Fieldtrip to Tanjung Sutera Resort, Sedili 13-14 March 2008

March 16, 2008 · No Comments

39 students and 5 teachers went to Tanjung Sutera Resort, Sedili for a field studies course. The focus of the trip will be a visit to an palm oil mill and an investigation on rocky shore ecology. Despite the very wet weather, all of the trip’s objectives were met.

The team first went to the Felda palm oil processing mill where short presentation on the various stages of palm oil processing was conducted, the students also had a chance to examine the products at various stages of palm oil processing before going for a short tour of the mill.

At Tanjung Sutera resort, the team continued their discussion on the issue of using palm oil as a biofuel. Once the weather clears up, they quickly moved down to the rocky shore for a quick walk to explore the various organisms at the high intertidal region. Amongst the interesting things seen were land crabs, hermit crabs, goose barnacles, and the shell of a horse shoe crab. The team moved back for dinner when it started raining.

After a short lesson on intertidal ecology, the team went down for an amphibian survey. They had the good fortune of seeing the four lined tree frog, banded bull frog, dark spotted chorus frog and also the asiatic toad. What is particularly interesting were the banded bull frogs congregating together at a pond and the males trying to out do each other with their mating calls. The result was this cacophony of frog calls, bull frogs dominating the majority of the air time, chorus frogs sneaking in between.

The next morning’s weather was perfect for the rocky shore transect. All spent a good 2 hours exploring the various zones where the transition of organisms at various zones were very distinct. As they progressed toward the low intertidal zone, organisms such as sea anemone, sea cucumbers and swimming crabs began to appear. The interplay of abiotic factors and biotic factors were clearly shown in the students’ transect data.

Photos of the trip here

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This was a compact field studies courses with ended with more questions for everyone to ponder over. For the coming term, there will be a Kent Ridge walk organised by the Sec 4 Bio and History RA students.

Resource on Ecological studies on Amphibians - Sodhi, N.S., Bickford, D., Diesmos, A.C., Lee, T.M., Koh, L.P., Brook, B.W., Sekercioglu, C.H., Bradshaw, C.J.A. 2008. Measuring the Meltdown: Drivers of Global Amphibian Extinction and Decline. PLoS ONE 3(2): e1636. (PDF)

Categories: Field studies · Teaching

Antibacterial Products May Do More Harm Than Good

February 27, 2008 · No Comments

From Scientific American

Strange but True: Antibacterial Products May Do More Harm Than Good
Antibacterial soaps and other cleaners may actually be aiding in the development of superbacteria.
By Coco Ballantyne

Tuberculosis, food poisoning, cholera, pneumonia, strep throat and meningitis: these are just a few of the unsavory diseases caused by bacteria. Hygiene—keeping both home and body clean—is one of the best ways to curb the spread of bacterial infections, but lately consumers are getting the message that washing with regular soap is insufficient. Antibacterial products have never been so popular. Body soaps, household cleaners, sponges, even mattresses and lip glosses are now packing bacteria-killing ingredients, and scientists question what place, if any, these chemicals have in the daily routines of healthy people.
Traditionally, people washed bacteria from their bodies and homes using soap and hot water, alcohol, chlorine bleach or hydrogen peroxide. These substances act nonspecifically, meaning they wipe out almost every type of microbe in sight—fungi, bacteria and some viruses—rather than singling out a particular variety.

Soap works by loosening and lifting dirt, oil and microbes from surfaces so they can be easily rinsed away with water, whereas general cleaners such as alcohol inflict sweeping damage to cells by demolishing key structures, then evaporate. “They do their job and are quickly dissipated into the environment,” explains microbiologist Stuart Levy of Tufts University School of Medicine.

Unlike these traditional cleaners, antibacterial products leave surface residues, creating conditions that may foster the development of resistant bacteria, Levy notes. For example, after spraying and wiping an antibacterial cleaner over a kitchen counter, active chemicals linger behind and continue to kill bacteria, but not necessarily all of them.

When a bacterial population is placed under a stressor—such as an antibacterial chemical—a small subpopulation armed with special defense mechanisms can develop. These lineages survive and reproduce as their weaker relatives perish. “What doesn’t kill you makes you stronger” is the governing maxim here, as antibacterial chemicals select for bacteria that endure their presence.

As bacteria develop a tolerance for these compounds there is potential for also developing a tolerance for certain antibiotics. This phenomenon, called cross-resistance, has already been demonstrated in several laboratory studies using triclosan, one of the most common chemicals found in antibacterial hand cleaners, dishwashing liquids and other wash products. “Triclosan has a specific inhibitory target in bacteria similar to some antibiotics,” says epidemiologist Allison Aiello at the University of Michigan School of Public Health.

When bacteria are exposed to triclosan for long periods of time, genetic mutations can arise. Some of these mutations endow the bacteria with resistance to isoniazid, an antibiotic used for treating tuberculosis, whereas other microbes can supercharge their efflux pumps—protein machines in the cell membrane that can spit out several types of antibiotics, Aiello explains. These effects have been demonstrated only in the laboratory, not in households and other real world environments, but Aiello believes that the few household studies may not have been long enough. “It’s very possible that the emergence of resistant species takes quite some time to occur…; the potential is there,” she says.

Apart from the potential emergence of drug-resistant bacteria in communities, scientists have other concerns about antibacterial compounds. Both triclosan and its close chemical relative triclocarban (also widely used as an antibacterial), are present in 60 percent of America’s streams and rivers, says environmental scientist Rolf Halden, co-founder of the Center for Water and Health at Johns Hopkins Bloomberg School of Public Health. Both chemicals are efficiently removed from wastewater in treatment plants but end up getting sequestered in the municipal sludge, which is used as fertilizer for crops, thereby opening a potential pathway for contamination of the food we eat, Halden explains. “We have to realize that the concentrations in agricultural soil are very high,” and this, “along with the presence of pathogens from sewage, could be a recipe for breeding antimicrobial resistance” in the environment, he says.

Triclosan has also been found in human breast milk, although not in concentrations considered dangerous to babies, as well as in human blood plasma. There is no evidence showing that current concentrations of triclosan in the human body are harmful, but recent studies suggest that it acts as an endocrine disrupter in bullfrogs and rats.

Further, an expert panel convened by the Food and Drug Administration determined that there is insufficient evidence for a benefit from consumer products containing antibacterial additives over similar ones not containing them.

“What is this stuff doing in households when we have soaps?” asks molecular biologist John Gustafson of New Mexico State University in Las Cruces. These substances really belong in hospitals and clinics, not in the homes of healthy people, Gustafson says.

Of course, antibacterial products do have their place. Millions of Americans suffer from weakened immune systems, including pregnant women and people with immunodeficiency diseases, points out Eugene Cole, an infectious disease specialist at Brigham Young University. For these people, targeted use of antibacterial products, such as triclosan, may be appropriate in the home, he says.

In general, however, good, long-term hygiene means using regular soaps rather than new, antibacterial ones, experts say. “The main way to keep from getting sick,” Gustafson says, “is to wash your hands three times a day and don’t touch mucous membranes.”

Categories: Biotechnolgy · Pathogens and Diseases · Teaching

Social networks illustrate how disease can spread

February 27, 2008 · No Comments

Social networks illustrate how disease can spread

By Anne Harding

NEW YORK (Reuters Health) - The best way to stop the next influenza pandemic in its tracks could be to shut down schools and keep students at home, according to the authors of a new study of social contact networks.

Based on the way they interact with one another, high school students “may form the local transmission backbone of the next pandemic,” Dr. Robert J. Glass of Sandia National Laboratories in Albuquerque, New Mexico, and his daughter, Laura M. Glass, suggest.

Networks for an entire community must be created to fully understand how to contain a potential epidemic, the senior Glass added in an interview. “With that kind of understanding you can then ask questions about where to target interventions,” he explained.

To develop the network described in the current study, the researchers surveyed elementary, middle and high school students about how and with whom they spent their time. Each person’s social network was characterized by the groups to which he or she belonged (such as the household, a class, or a sports team) along with the smaller network of person-to-person contacts within each of these groups.

The researchers then gathered information on the size of these groups, how many people a person was connected to within it, the amount of time he or she spent in the group, and the closeness of the contact a person had with individuals in that group.

They then evaluated the flu transmission potential of various contacts based on the degree of closeness and how much time a person spent in those contact activities.

Households, classes, groups of friends and sports teams all represented networks with “high potential for the transmission of influenza,” the researchers found. The older a child was, the more important outside connections became, with 75 percent of those in high school having social contacts outside the home conducive for transmitting influenza.

If it turns out that young people are a key route of influenza transmission within a community, closing schools and keeping children at home could help to shut down an epidemic, the researchers say. However, they add, similar studies in other groups within the community must be done to understand the other ways that the disease might spread.

“There are a whole bunch of things that you can learn from doing this kind of thing,” Glass noted. Networks can not only be used to study the spread of other types of disease, he added, but could also be used to identify individuals who are at-risk because they are less connected than others.

SOURCE: BMC Public Health, online February 14, 2008.

Categories: Biotechnolgy · Pathogens and Diseases · Teaching

On digestion

February 24, 2008 · No Comments

Good animation and summary of the digestive system by national geographic magazine.

Digestive System

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Article on Obesity.

Good photo gallery on the digestive system.

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Categories: Nutrition · Teaching

Good animation of the prehistoric timeline by Nat Geo

February 23, 2008 · No Comments

Here’s a good animation and summary of the major evolutionary events on Earth since its formation 4.5 billion years ago.

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Categories: Evolution · Teaching

Clarifying cloning

February 23, 2008 · No Comments

This is a good summary from Genetics Policy Center on how cloning is achieved and its uses.

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Categories: Biotechnolgy · Continuity of Life · Ethics · Teaching

Dr James Watson retires admist controversy

October 27, 2007 · No Comments

From BBC news:

A Nobel laureate who claimed Africans were less clever than Europeans has retired from his post at an American research institution.

James Watson, 79, and the Cold Spring Harbor Laboratory in New York announced his departure on Thursday.

The DNA pioneer triggered an international furore over his remarks in a British newspaper interview.

In his retirement statement, Dr Watson said his decision was “more than overdue” because of his age.

The scientist added: “The circumstances in which this transfer is occurring, however, are not those which I could ever have anticipated or desired.”

Suspended

Eduardo Mestre, chairman of the board of Cold Spring Harbor Laboratory, said in a statement: “The board respects his decision to retire at this point in his career.”

The laboratory, based in Long Island, suspended him after his comments appeared in the Sunday Times Magazine of London on 14 October.
He was quoted as saying he was “inherently gloomy about the prospect of Africa” because “all our social policies are based on the fact that their intelligence is the same as ours - whereas all the testing says not really”.

He said that while he hoped everyone was equal, “people who have to deal with black employees find this is not true”.

The Chicago-born academic also said people should not be discriminated against on the basis of race, because “there are many people of colour who are very talented”.

Speaking engagements were cancelled in the aftermath of the interview’s publication. He later apologised for the comments.

Dr Watson was a joint winner in 1962 of the Nobel Prize for discovering the structure of DNA, the molecule that lies at the heart of heredity in living organisms.

Categories: Biotechnolgy · Ethics · Teaching
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Bioregulation in animals

October 9, 2007 · No Comments

A series of lectures on human physiology. With good diagrams.

Bioregulation in Animals

Categories: Homeostasis · Nutrition · Teaching

Comparative Guide to Mangroves

September 26, 2007 · No Comments

A comparative guide to mangroves by Dr Jean Yong, NIE.
Comparative Guide to Mangroves

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Categories: Conservation · Ecology · Field studies · Teaching

RGS Philosophy Blog

August 24, 2007 · No Comments

The philosophy department has started this nifty blog on philosophy. An excellent resource if you want a splitting headache.

Here it is - RGS Philosophy Blog

Categories: Ethics · Teaching